Results for "Sequencing Data Analysis"
Top-level pages
When you have both Illumina and Nanopore data, then SPAdes remains a good o...equired for MDA (single-cell) data --meta this...quired for metagenomic sample data --rna this...bling Advanced options: --dataset <filename>...2364 days ago
Single Cell RNAseq data analysis tutorial !!
...ul links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data A step-by-step workflow for...us: A toolkit for single cell sequencing analysis http://biorxiv.or...uation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2364 days ago
- ...of the major steps in RNA-seq data analysis, including experimental d...of best practices for RNA-seq data analysis RNA-seq workflow: gene-...ene and transcript expression analysis of RNA-seq experiments with T...Seq exercise An open RNA-Seq data analysis pipeline tutorial with a...
2364 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload...es the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours per...umbers to the user's sequence data by BLAST searches, respectively,...hine and supported by updated databases will enable biologists to pe...2345 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic w...le DBI module has been the focal point of database access since its inventio...it to provide the same interface to huge relational database...2335 days ago
List of visualization tools for network biology
...Igraph Collection of network analysis tools with the emphasis on ef...ulb.ac.be/neat/ Ondex Data integration and visualization of...Automatic reconstruction and analysis of biological networks and Pe...manually and import external data http://tinyurl.com/yEdGraph/ We...2301 days ago
List of visualization tools for genome alignments
...esults but also for improving analysis protocols, testing data quality, and generating result drafts. Its integration in analysis pipelines allows the optimizati...nce features, next-generation sequencing (NGS) data and the results of analyses w...2297 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and...informatician to the frequently used tools for NGS analysis as well as giving experie...p;— find all instances of file using indexed database built from the updatedb comma...2294 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for patter...m the file. $ awk '{print;}' data/test.tsvcontig1 ACTGTCTGTCACT...1","$2;}END{print "-------"}' data/test.tsvHeader,Sequencecontig...TTTATATATT You can also store data in...2293 days ago
Computational resources for TE discovery and TE detection
...d evolution as well as their impact on genome sequencing, assembly, annotation and ali...eveloping new methods for their computational analysis. Following are the list...TR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Struc.html LTR_MINER http:/...2287 days ago
