Comment on "List of non-commercial NGS genotype-calling software"
...ructural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lump...manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ]gridss&n...1142 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...tegration pipeline to utilize sequencing data generated by multiple technologies...nbsp;Manuscript, GitHub Sequencing Data:Data and analyses from most s...variants for pilot genomeGIAB data collected through 2016GA4GH Best...il Lists:General announcementsAnalysis Team Blog about GIAB Work1560 days ago
2137 days ago
Comment on "List of popular bioinformatics software/tools"
MEDIPS: genome-wide dierential coverage analysis of sequencing MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments https://www.bioconductor.org/packages/3.3/bioc/vignettes/MEDIPS/inst/doc/MEDIPS.pdf2998 days ago
Comment on "Does anyone have Nanopore latest updates?"
Improved data analysis for the MinION nanopore sequencer http://www.nature.com/nmeth/journal/vaop/ncurrent/full/nmeth.3290.html A complete bacterial genome assembled de novo using only nanopore sequencing data http://biorxiv.org/content/early/2015/02/20/0155523358 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original pac...ioinformatics-in-biomed/SRAdb: query and use public next-generation sequencing data from within Rhttp://www.biomed...3623 days ago
Comment on "R and Bioconductor Tutorial"
...e genomes and BioC annotation data [3] DEGSeq – Identify differ...expressed genes from RNA-Seq data. [4] IRanges – infrastructur...harvard.edu/kb/bioinformatics/sequencing-information/ngs-analysis-with-r/ http://bioconduc...elp/workflows/high-throughput-sequencing/3670 days ago
Comment on "R and Bioconductor Tutorial"
Next generation sequencing data analysis with R/Bioconductor http://www.bioconductor.org/help/course-materials/2012/CSC2012/Bioconductor-tutorial.pdf3670 days ago
Comment on "Latest paper on comparison of mapping tools"
The recent revolution in sequencing technologies has led to an exponential growth of sequence data. To tackle this ‘data deluge’, here Lawrence...tory introduce the BioPig sequence analysis toolkit as one of the solutions that scale to data and computation. BioPig: a Hadoo...3809 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full3811 days ago