HECIL: A Hybrid Error Correction Algorithm for Long Reads with Iterative Learning
...correction framework that determines a correction policy for erroneous long reads, based on optimal combinations of decision weights obtained from short read alignments. HECIL...1966 days ago
GenomeView: genome browser and annotation editor
GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are...1965 days ago
Genome assembly tutorial "Genome Assembly for short and long reads"
...How to perform basic quality checks on the input data How to run a short read assembler on Illumina da...anopore data How to improve the accuracy of a long read assembly using short reads How to assess the qual...1948 days ago
1947 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is...1936 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes. In particular, it accomplishes this by: Learni...1900 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
...tructures. In this work, we explore the use of hardware/software co-design and hardware acceleration to significantly reduce the execution time of short sequence alignment, a crucial...1659 days ago
1611 days ago
StringTie Transcript assembly and quantification for RNA-Seq
...ble and quantitate full-length transcripts representing multiple splice variants for each gene locus. Its input can include not only alignments of short reads that can also be used b...1441 days ago
1588 days ago