BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
..._salmonella.fq (salmonella reads)clean.fq (unmapped reads)In this case, "int=t" means that the input file is paired and interleaved. For single-end reads you would leave tha...2308 days ago
List of visualization tools for genome alignments
...ies. Low- or high-depth read pileups and easy visualization of putative single nucleotide and structural var...informatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and pair-end short reads...2277 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...ene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a numb...844 days ago
Tools to Predict the Impact of Missense Variants !
...functional consequences of both coding variants, that is, nonsynonymous single‐nucleotide variants, and nonc...functional consequences of both coding variants, that is, nonsynonymous single‐nucleotide variants, and nonc...2197 days ago
List of non-commercial NGS genotype-calling software
...e and SNP calling : SOAP2 http://soap.genomics.org.cn/index.html Single-sample High-quality variant d...se (for example, dbSNP) Package for NGS data analysis, which includes a single individual genotype caller (S...2090 days ago
Parallel Processing with Perl !
...since it does take some time(remember 100GB). I think now you can use a mysql database LOAD DATA LOCAL INFILE command to load all the files into a single table(Should take about 3hrs...2073 days ago
Bioinformatics tools for genome assembly !
...re is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for single-cell and multi-cell bacterial...279 days ago