2935 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which...uch as HOMER. Setting up your computing environment Retrieving and storing sequencing files (your own data or...2935 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and r...2918 days ago
2920 days ago
2918 days ago
2918 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...ntification of structural variation in a genome re-sequencing experiment. Hagfish requires...2910 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-so...mapping second and third-generation sequencing reads to a reference genome....ign reads generated by all the major sequencing technologies, including Illum...mappings for all the generated data (sequencing technologies, low-coverage an...2910 days ago
2910 days ago
2897 days ago