Results for "Single molecule Sequencing"
Bio-Scripts
#!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "2907 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE...a t distribution #USAGE: CI_normal(matrix[,x],97.5) - single c...ormal distribution #USAGE: CI_tdist(matrix[,x],97.5) - single col...
2864 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --lef...ds completed successfully. :-) ** Harvesting all assembled transcripts into a single mul...
2120 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fa...filename(s) and deflines (only for single...become joined into single str...
2119 days ago
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. ad...CRAM file to locate duplicate molecules. MarkDuplicatesSpark...ed allele fractions in pooled sequencing CalculateGenotypePosteri...
2068 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------------------------------------....5.5 R/3.2.3-goolf-1.4.10 gromacs/single/4.5...2027 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6...: GetEnergy.c:304:7: warning: variable ‘leftSingle’ set but not used [-Wunused-but-set-variable] int leftSingle;...c/design/design_pfunc_utils' make -C design/single-com...
2019 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format)...is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1552 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to dele.../(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a single let...1543 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # Th...1535 days ago
