Results for "Single molecule Sequencing"
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High-throughput genomics has revolutionized biological research, however, while the number...formed expectations of gene content from near-universal single-c...hensive lineage-specific sets of Benchmarking Universal Single-Cop...2922 days ago
- Cutadapt finds and removes adapter sequence...d sequence from your high-throughput sequencing reads. Cleaning your data...often required: Reads from small-RNA sequencing contain the 3’ sequenci...because the read is longer than the molecule that is sequenced. Amplicon rea...
2919 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data. The latest version is...
2919 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...tification of structural variation in a genome re-sequencing experiment. Hagfish requires...2912 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-sourc...mapping second and third-generation sequencing reads to a reference genome....gn reads generated by all the major sequencing technologies, including Illum...appings for all the generated data (sequencing technologies, low-coverage an...2912 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference gen...for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy...
2912 days ago
- Database to Database Conversions db2db allows for conversions of identifiers from one datab...widely depending on the number of outputs and the options selected. Conversions to a single out...
2899 days ago
- methylKit is an R package for DNA methylation anal...annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its varian...It can also handle whole-genome bisulfite sequencing data if proper input format i...
2898 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visual...nal Biology special issue : Quality assessment and control of high-throughput sequencing data). It contains bash/perl...
2888 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) packag...integrated modules. These modules can be executed as a single p...types to Binary Alignment Map (BAM) format, allowing a single inp...
2887 days ago
