Results for "Single molecule Sequencing"
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Genome STRiP (Genome STRucture In Populations) is a suite of...g structural variations using sequencing data. The methods are des...hs and mixtures of paired and single-end reads. A minimum of 20 to 30...discovery or genotyping on a single sequenced genome or a small set o...2813 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo a...
2826 days ago
- Redundans pipeline assists an assembly of heterozygou...embled contigs, paired-end and/or mate pairs sequencing libraries and returns&nb...to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 o...
2818 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy co...for more customized figures and scripting. http://www.e-rna.org/r-chie/plot.cgi?eg=single...
2818 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wi...PERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2810 days ago
- These tutorials are written for hundreds of...ith large volume of next-generation sequencing (NGS) data. NGS technologies...ht a dramatic shift in the world of sequencing. Merely five years back, geno...s government agencies. The tasks of sequencing and assembly were handled by...
2814 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We ha...nt of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2812 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Hu...bitrarily parallelizable across multiple nodes using MPI) memory efficient. (Even a single nod...
2789 days ago
- The accurate description and annotation of structural variants can be complex. This is...wn to the actual base pair positions. Furthermore, multiple rearrangements in a single are...
2788 days ago
- Development of cancer is driven by somatic alterations, including numerical and struct...y array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2169 days ago
