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2081 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------------------------------------....5.5 R/3.2.3-goolf-1.4.10 gromacs/single/4.5...2040 days ago
2032 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format)...is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1565 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to dele.../(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a single let...1556 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # Th...1548 days ago