Synima: a Synteny imaging tool for annotated genome assemblies
...DF. Each of these programs are included with the Synima package, and a pipeline for their use. Synima has a range of graphical parameters including size, colours, order, and labels,...2026 days ago
1986 days ago
BLAST options, setting and defaults
...-3 Expectation value:(E) [real] default = 10.0 default = 10.0 default = 10.0 default = 10.0 default = 10.0 default = 10.0 Word size:the size of the initial word that must...1985 days ago
Versatile genome assembly evaluation with QUAST-LG
QUAST-LG is an extension of QUAST intended for evaluating large-scale genome assemblies (up to mammalian-size). QUAST-LG is included in the QUAST package starti...1974 days ago
1943 days ago
ChIPulate: A Python3 framework to simulate read counts in a ChIP-seq experiment
ChIP-seq simulation pipeline, ChIPulate, we assess the impact of various biological and experimental sources of variation on several outcomes of a ChIP-seq experiment,...1880 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...sign, and further parallelized for distributed-memory systems using MPI to overcome high memory overhead barrier and achieve good parallel and data-size scalability.1774 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
...increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism with small genome size and great biotechnological im...1726 days ago
1700 days ago
ALF--a simulation framework for genome evolution.
Artificial Life Framework (ALF) simulates a root genome into a number of related genomes. Result files include the resulting gene sequences, true tree and true MSAs. A...1669 days ago