Results for "Sizes"
Blogs
List of bioinformatics workflow management tools !
...flow Managers BigDataScript – A cross-system scripting language for working with big data pipelines in computer systems of different sizes and capabilities. [ pape...1156 days ago
- ...ways to improve your bioinformatics knowledge. Login and check almost all web servers and keep yourself updated, like how many genomes sequenced, sizes, techniques used, software na...
2864 days ago
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Bookmarks
- ...d help to choose parameters for downstream analysis. We demonstrate its accuracy on 324 simulated and 16 real datasets with a wide range in genome sizes, heterozygosity levels, and e...
2359 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...alignment of mate pair read pairs to a reference genome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduction of library prep...2712 days ago
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Pages
Check the Size of a directory & Free disk space.
...the current working directory along with their sizes in kilobytes (default). The l...dable format. Therefore, in order to print the sizes of the files / directories in...ight, this is not the only option to check the sizes and free spaces but there are...3716 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...ata BinPacker is a novel de novo assembler by modeling the transcriptome assembly problem as tracking a set of trajectories of items with their sizes representing coverage of thei...2699 days ago
- ...rary files [default: <output_dir>/tmp] -k <int,int,...> comma-separated list of k-mer sizes (must be odd and...
2364 days ago
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Wire posts
News
Atlas of ancient inter-ethnic group !!!
...ios involving multiple waves of mixing over time or between multiple groups can be difficult to tease apart. But it is believed that larger sample sizes will improve resolution. Thes...3746 days ago
- ...Tree View: Genomic Collections/Assemblies now show accessions, not just names Tree View: layout updated to better accommodate nodes of different sizes Table Import Dialog (MacOS):...
2878 days ago
Bio-Scripts
Install Parrot Virtual Machine !
...les should be compiled in..............done. auto::headers - Probe for C headers................................done. auto::sizes - Determine some sizes.................................1550 days ago
Bash script to get intergenic region from genome files !
...will require the size of the chromosomes. wget http://xxx.chrom.sizes cat xxx.chrom.sizes | sed 's/^chr//' | sed 's/Cp/...\t";} $3=="gene" {print $1,$4-1,$5}' | bedtools sort -g xxx.chrom.sizes | bedtools complement -i std...1379 days ago
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Tags
Human chromosome length extractor !
Is there any easiest known way to extract organism's chromosome length?Tags: Human, Chromosome, Sizes, Extractor, NGS, Online
2976 days ago
Comments
- ...to simulate reads with different error rates, read lengths, and insert sizes. The ART is open-source and a...nt sequencing parameters, such as error rates, read lengths, and insert sizes. SimSeq: SimSeq is a Pyt...
429 days ago
Comment on "Sibelia: A comparative genomics tool"
...in details. Blocks coordinates ------------------ File name = "blocks_coords.txt". First part of this file lists input sequences, their IDs, sizes and descriptions. IDs are jus...1298 days ago
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