List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools
3939 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten recommendations for command line software author’s...Tags: Bioinformatics, Computational Biology, Rules, Server, Software, Tips, Suggestions
3612 days ago
Software developed in pevsner lab
DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Dat...Tags: Bioinformatics, Cmputational Biology, Tools, Software, Pevsnerlab
3492 days ago
UCSC Genome Browser and Blat software !
This directory contains Genome Browser and Blat application binaries built for standalone command-line use on various supported Linux and UNIX platforms. To determine which set of binaries to download, type "uname -a" on the command line to display your machine type. In most cases the usage state...Tags: Bioinformatics, UCSC, Genome, Browser, Blat, Software
2993 days ago
Tags: Bioinformatics, NGS, Assembly, BAM, SAM, CRAM, Picard, FastQC, Tool, Software
2921 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, feel free to use and report issues encountered. Canu is a hierachical assembly pipeline which runs in fo...Tags: Bioinformatics, FASTQ, NGS, Assembly, Genome, CANU, Assembler, Tool, Software
2907 days ago
Tags: Bioinformatics, GKNO, Pipeline, Tool, Software
2900 days ago
Tags: Bioinformatics, Cytoscape, Software, Platform, Visualization, Networks, GO
2898 days ago
Tags: Bioinformatics, GAEMR, Assembly, Stats, Correctness, Accuracy, Software, Tool, NGS
2875 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software
2854 days ago