CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and bet...ion of CHSs. Results Here we present a Java software CHSMiner that detects CHSs ba...ctive visualization of the results. We tested the software on...2374 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-ma...wnload sample PacBio from the PBcR website wget -O- http://www.cbcb.umd.edu/software/PBc...2366 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predictions from BLAST or UBLAST with co...2366 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, possibility for simultaneous chromosome and FISH/GISH/banding signal measurement and idio...2365 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By...2365 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST takes full advanta...h, etc.), Does not require any additional hardware, since it is a software solution. It is easy to install,...2362 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical composition of typical metagenome data sets. Based on a...2359 days ago
2350 days ago
1398 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows f...at the Genome Sciences Centre website: http://www.bcgsc.ca/platform/bioinfo/software/nan...2345 days ago