Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED databa...lity of genome assemblies created via an assembly software. PAGIT compiled four tools: (...sequences and; (iv) RATT for help annotation. The software wa...2345 days ago
Bioinformatics Web Application Development with Perl
...he Internet. Web Application Development The old days of CGI programs and the simple development style that represented seem c...PIs for extension and further development. It's the most mature of the...of the huge ecosystem of Perl development available on the CPAN without...2334 days ago
List of visualization tools for network biology
...Dizzy Chemical kinetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...ion algorithms https://www.broadinstitute.org/software/spectralnet Tulip Enables the development of algorithms, visual encodin...2301 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but als...ttp://www.bcgsc.ca/platform/bioinfo/software/abyss-explorer BamView Geno...http://www.sanger.ac.uk/resources/software/artemis/ DNannotator ...b.ucsd.edu/star/browser SVA Software fo...2297 days ago
Computational resources for TE discovery and TE detection
...p;http://urgi.versailles.inra.fr/development/blaster/ Censor&nbs...http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.jane...http://www.eecs.wsu.edu/~ananth/software.htm MAK http://wesslerclust...nder http://bioinf.dimi.uniud.it/software/software/smartfinder Tandem Re...2287 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-cell...863 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can b...Professionally, Python is great for backend web development, data analysis, artificial in...nbsp;(2.6 - 2.x & 3.1 - 3.x) Test-Driven Web Development with Python (3.3 - 3.x)...2268 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformat...am https://mafft.cbrc.jp/alignment/software/algorithms/algorithms.html Me...am https://mafft.cbrc.jp/alignment/software/tips.html Omega | Overlap-gra...Home Page http://www.cbcb.umd.edu/software/Re...2254 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, f...2215 days ago
Gap filling or Contigs extensions tools !
There are many tools to perform gap filling using Illumina short reads, fo...esolution but it is not a very good software, it is useful only in some sp...ations. Take a look at the PRICE software from the DeRisi lab. Its mean...: http://www.sanger.ac.uk/resources/software/pa...2178 days ago