Results for "Software Programming"
Top-level pages
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED databa...lity of genome assemblies created via an assembly software. PAGIT compiled four tools: (...sequences and; (iv) RATT for help annotation. The software wa...2344 days ago
Bioinformatics Web Application Development with Perl
...as the default choice for web programming. Its presence everywhere made...o both client and server side programming, with rich client interfaces...dule central, modern Perl web programming follows a stricter separation...prowess as a general purpose programming language as well as its flexi...2334 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze...y Chemical kinetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...algorithms https://www.broadinstitute.org/software/sp...2301 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but als...ttp://www.bcgsc.ca/platform/bioinfo/software/abyss-explorer BamView Geno...http://www.sanger.ac.uk/resources/software/artemis/ DNannotator ...b.ucsd.edu/star/browser SVA Software fo...2296 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more files to see if...2292 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as t...ITE http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.jane...par http://www.eecs.wsu.edu/~ananth/software.htm MAK http://wesslerclust...TFinder http://bioinf.dimi.uniud.it/software/so...2286 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-cell...863 days ago
Python learning resources for bioinformatics and computational biologist !
...ons visit http://www.bestprogramminglanguagefor.me/why-learn-pytho...are the list of useful python programming resources: 20 Python Libra...Full Stack Python Functional Programming in Python (Just fill the...x & 3.1 - 3.x) Practical Programming in Python - Jeffrey Elkn...2268 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformat...am https://mafft.cbrc.jp/alignment/software/algorithms/algorithms.html Me...am https://mafft.cbrc.jp/alignment/software/tips.html Omega | Overlap-gra...Home Page http://www.cbcb.umd.edu/software/Re...2254 days ago
Ligand Docking Tools and Software !
Ligand docking referred to cases where small molecule (“ligand”) is being docked into much larger macromolecule ("target"). The following is partial list of docking software, f...2215 days ago
