Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...h Statistical approach and Splicing events detection. Strand NGS also supports novel discovery like identification of novel genes, exons and Novel splice junctions, alongside it can a...2770 days ago
Bioinformatics tools for telomere to telomere assembly !
...Wenger)● JumboDB – tool for de Bruijn graph construction (Anton Bankevich @AntonBankevich)● uLTRA – tool for splice alignment of long transcripto...1007 days ago
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minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...nomic reads ./minimap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads ./minimap2 -ax splice ref.fa rna-reads.fa > aln.sam # spliced long reads ./minimap2 -ax s...2161 days ago
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Tags: ChopStitch, exon, annotation, splice, graph, transcriptome, assembly, whole, genome, sequencing
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HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123. The aim of this data set is to give standardized material to train and to assess the prediction accuracy of computational approaches for gene identification and c...Tags: HS3D, Homo, Sapiens, Splice, Sites, Dataset, Human
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Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3663 days ago