2880 days ago
Genome Assembly Tools and Software - PART1 !!
...benchmarks are described in the Genome Biology manuscript. misFinder...ve 3’UTR Annotation IsoSCM (Isoform Structural Change Model) is a new method...laSV 1.0.2 – Local Assembly based Structural Variation Discovery tool...2697 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengt...ssumed to be sampled from a normal distribution. Therefore, in the absence of structu...2533 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which ha...ter states is the best. phylogenetics -- Field of biology that deals with the relations...order is conserved. systematics -- Field of biology that deals with the diversity...2473 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignm...T directly from the genome sequencing reads Software (Python) http://jordan.biology.gatech.edu/page/software/stri...2382 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed...ion of protein-coding genes, as well as other functional genome units such as structu...2342 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mat...ochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet...s (SBML files) into standardized diagrams (Systems Biology Graphical Notation Process De...2299 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving analysis protocols, testing...h-depth read pileups and easy visualization of putative single nucleotide and structu...2295 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience in writing one...2291 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that all...ciences, has over 11 years experience in molecular biology, next-generation sequencing b...ting. Dr. Suman holds a Ph.D in Molecular and Cell Biology from Indian Institute of Scie...2275 days ago