odgi: optimized dynamic genome/graph implementation
...allows odgi to efficiently compute and transform pangenomes with minimal overheads. odgi implements a dynamic data structure that leveraged multi-core CPU...817 days ago
Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
...and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer...ted from raw or even better from trimmed reads and show the haplotype structure using heterozygous kmer pairs...793 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...logous and paralogous copies in all the other sequenced metazoan genomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure in all the ancestral species...790 days ago
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
The GenomeQC web application is implemented in R/Shiny version 1.5.9 and Python 3.6 and is freely available at https://genomeqc.maizegdb.org/ under the GPL lic...710 days ago
445 days ago
Metabuli 분리 improves metagenomic read classification
...ference sequences, leverageing higher conservation of AA sequences. Metabuli combines the information of both sequence types using a novel k-mer structure, metamer, to enable both...330 days ago
4 days ago