Results for "Sub Folder"
Bio-Scripts
...-devel mysql-devel libxml2-devel # Create a folder where you want to install...: # Note that it doesn't need to be your home folder. Put it wherever you want to...$PERL_BASE # Download source tarball into a subfolder named src, and untar: cur...2137 days ago
- #!/usr/local/bin/perl -w # Can be easily modified to run any command on every sequence in a folder # Directory of sequences $m...
2909 days ago
- You have to compile the code with a C++ compiler. TDM-...compiler, you need to open the cmd, navigate to the folder containing the .cpp files usi...exe file. The exe files will appear in the same folder....
843 days ago
Perl script to find missing and move to desire folder
#!/usr/bin/perl -w use strict; use warnings; open(my $ids, "2232 days ago
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source and extract it mkdir ~/python cd ~/python wget https://www.python.org/ft...2091 days ago
To convert just one specific read group to fastq
...he sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5..., | grep SRR | head -$N > selected.txt # Store the data in the reads folder. mkdir -p reads # Downloa...1535 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...o_cache/download/archive/release_138_1/Exports/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs)..."exists \t blastDB, If not installed sucessfully, delete the folder and re-run it" fi echo -e...1153 days ago
Commands to transfer files and folder in docker !
#To copy files between host machine and container (execute the commands on host, not inside container): $ docker cp FILE_OR_FOLDER_ON_HOST CONTAINER_ID:/CONTAINER_DIRECTORY #or $ docker cp CONTAINER_ID:FILE_OR_FOLDER_IN_CONTAINER HOST_DIRECTORY978 days ago
Extract all fasta sequences except ids !
...fna > filtered_without_omi.fasta #extract subseq seqtk subseq omi_ids.fa omi_single_id.t...fa -k 19 # Extract the kmer of omi seqtk subseq kmercollection.fasta ../om...ts #count the lines in each file -- go in folder for FILE in *; do wc -l $FIL...821 days ago
- #GATK is a toolkit developed by the broad institute focused primarily on variant di...make a symlink so the executable downloaded is available directly from our bin folder. To run GATK we must first st...
805 days ago
