ARCS: scaffolding genome drafts with linked reads
ARCS requires two input files: Draft assembly fasta file Interleaved linked reads file (Barcode sequence expected in the BX tag of the read header or in the form "@readname_barcode" ; Run Long Ranger basic on raw chromium reads to produce this interleaved file)1965 days ago
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molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...iration offers broad range of cheminformatics software tools supporting molecule manipulation and...drug design, high quality molecule depiction, molecular database tools supporting substructure and similarit...1932 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...h BWA-MEM and parsed to identify variants. Sequencing reads are then realigned to the contigs with BWA-MEM, and variants are scored by their read support.1930 days ago
iRNAD: a computational tool for identifying D modification sites in RNA sequence
iRNAD, for identifying D modification sites in RNA sequence. In this predictor, the RNA samples derived from five species were encoded by nucleotide chemical property and nucleotide density. Support vector machine was utilized to perform the classification. http://lin-group.cn/server/iRNAD/1816 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...ssociated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and identifiers, branch lengths, support values, and gene duplication...1610 days ago
jtools : more efficient presentation of regression analyses
...s the more efficient presentation of regression analyses. There are a number of functions for other programming and statistical purposes as well. Support for the survey pack...1544 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, an...1538 days ago
SvABA: Structural variation and indel detection by local assembly
...h BWA-MEM and parsed to identify variants. Sequencing reads are then realigned to the contigs with BWA-MEM, and variants are scored by their read support.1517 days ago