BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of..."Match Rate" is the number of symbols indicating a reference match...retty obvious. Convert SAM format from 1.4 to 1.3 (...the output filename, the "%" sym...ads in dual files using the # symbol. For example: Code: $ bbsp...2280 days ago
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Download mutliple fasta file from NCBI in one GO!!
if you have less time, then use three ways mentioned in bookmark link to extract/down...en that you already have a list of GIs or accession IDs . Alternatively, use one lin...re GIs.txt contains a list of GIs or accession IDs. (...3919 days ago
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Bio++ : C Language libraries for your biological need
C has always been a language that never atte...it and efficiency. It was possible to convert from C to C++ gradually,...derms and other invertabrates)Amino acids properties: volume, polarity and...and store in string arrays, etc.Text: convert text to any other type and vi...3957 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of q...assembly problem by using the unique gap-flanking sequences to group reads and convert the problem to a local assemb...2695 days ago
Perl one-liner for bioinformatician !!!
With the emergence of NGS technologies, a...numbering lines, doing calculations, converting and substituting text, del...110, 103); print pack("C*", @ascii)'#converts ascii values into character...' #Camel Casingperl -pe 's|\n|\r\n|' #Convert unix new lines into DOS new l...3637 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows f...t gene function. Enter a gene symbol or gene name, for example "CD...Search proteins by UniProt IDs, gene name or keywords Collect...Features: Look up genes by symbol or description. Gene inde...ver 30 species, based on gene symbol...3550 days ago
National Workshop on Data Deluge in Biology: Use of High-Performance Grid & Cloud computing
Workshop on "Data Deluge in Biology: Use of High-Performance Grid & Cloud computing"- December 19-20, 2013 in...ber 10th, 2013. Confirmation mail need to be sent to the following three email-ids:...3808 days ago
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SRF/JRF Bioinformatics at CIARI
Realizing the importance of Island Agriculture to meet the requirements of local po...cultural production technologies which utilizes the strengths of the island and convert the constraints in opportunit...3084 days ago
JRF Bioinformatics job position in University of Hyderabad
JRF Bioinformatics Eligibility : ME/M.Tech(Bio-Informatics/Bio-Chemistry Engg), MSc(Bio-Informatics) Locati...aid position. The candidates should also enclose detailed CV and the name/Email IDs of...3059 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
Translational Bioinformatics: Transforming 300 Billion Points of Data into Diagnost...may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 billion points...3919 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
#!/usr/local/bin/perl -w # Sequence formats to choose: Fasta, EMBL. GenBank, Swissprot, PIR and GCG use Bio::SeqIO; $inFile = "BRCA2.fa"; $in = Bio::SeqIO-...2925 days ago
Perl script to extract lines with matching ids !!
#!/usr/bin/perl use strict; use warnings; my %patterns; #USAGE: perl extactByIds.pl Idsfile1 file2 > Result # Open file and get patterns to search for open(my $fh2,"2884 days ago
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineeri...ion of these changes in some other selected body fluids will be revealed within the s...rmation about the system the articles with the PMID IDs; PM...2371 days ago