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Results for "Symbol IDs Convert"

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• • Jitendra Narayan@admin

  

  Convert space separated data to tab separated: perl -p -i -e 's/\s+/\t/g' file.txt #Perl #Tipsoftheday #Perlonliner

  3856 days ago

• • Jit@jit.aber

  

  Extract list of read ID from bam file: samtools view mbi.sorted.bam |perl -ne '/ID/ && print' > extractedID.sam #Extract #Ids #SAM #BAM #NGS

  3628 days ago

• • Rahul Nayak@rahul

  

  Extract sequences by their ID from a fasta file. perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.txt sample1.fa #Extract #Sequences #IDs #Fasta #Perl #Trick #Oneliner

  3154 days ago

• • Radha Agarkar@radhaagarkar

  

  Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta

  2782 days ago

• • Radha Agarkar@radhaagarkar

  

  Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #

  2782 days ago

• • Jit@jit.aber

  

  MiraConvert http://manpages.ubuntu.com/manpages/xenial/man1/miraconvert.1.html #MIRA #Assembler #Convert

  2698 days ago

• • Jit@jit.aber

  

  Convert ps2pdf full size without cropping it : $ ps2pdf -dEPSCrop file.ps #Linux #Crop #PS #ps2pdf

  2642 days ago

• • Jit@jit.aber

  

  Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

  2614 days ago

• • Abhimanyu Singh@abhimanyu

  

  fastq to fasta convertor $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #Convert #Fasta #Fastq #fa #fq

  2544 days ago

• • Jit@jit.aber

  

  Add ">" in front of ids. sed -e 's/^/prefix/' file #Sed #Add #>

  2588 days ago

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