S-plot2: creates an interactive, two-dimensional heatmap of sequences
S-plot2 creates an interactive, two-dimensional heatmap cap...to extract, analyze, and automate BLAST queries of regions of interest within the heatma...tates the investigation of quickly evolving coding regions, novel coding regions, and la...2048 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
S-plot2 creates an interactive, two-dimensional heatmap cap...to extract, analyze, and automate BLAST queries of regions of interest within the heatma...tates the investigation of quickly evolving coding regions, novel coding regions, and la...2044 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
CSBFinder is a standalone Desktop java application with a graphical user interface, that can also be executed via co...y for the discovery, ranking, and taxonomic distribution analysis of colinear synteni...2022 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
BAUM, breaks the whole genome into regions by adaptive unique mapping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly b...2022 days ago
Scribl : HTML5 canvas genomics graphic library
Scribl is a javascript, Canvas-based graphics library that easily generates biological visuals of genomic regions, alignments, and assembly data. Scribl can also be used in conventional offline pipelines, since everything needed to generate charts can be contained in a single html file.2021 days ago
QUAST-LG: Versatile genome assembly evaluation
QUAST-LG-a tool that compares large genomic de novo assemblies against reference seque...t be reconstructed completely due to complex repeat patterns and low coverage regions, we introduce a concept of up...2021 days ago
2010 days ago
regioneR: an R package for the management and comparison of genomic regions
Regioner is an R package for the management and comparison of genomic regions. It offers a set of function...it's possible to study the association of a set of regions with other sets of regions, f...1974 days ago
Purge Haplotigs: Pipeline to help with curating heterozygous diploid genome assemblies
Some parts of a genome may have a very high degree of heterozygosity. This causes contigs for both haplotypes of tha...n the haploid or phased-diploid assembly. Identify pairs of contigs that are synteni...1968 days ago
EXCAVATOR: detecting copy number variants from whole-exome sequencing data
EXCAVATOR, for the detection of copy number variants (CNVs) from whole-exome sequencin...us hidden Markov model algorithm and a calling method that classifies genomic regions into five copy number states....1950 days ago