GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk us...onalities (handling multiple targets simultaneously and extracting homologous regions) of the new program are not m...1940 days ago
HumCFS: a database of fragile sites in human chromosomes
Fragile sites are specific chromosomal region that exhibit an increased frequency of c...to replicative stress. Since from the discovery of chromosomal fragile sites/regions (CFS), several line of eviden...1855 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
Apollo is a plug-in for the JBrowse Genome Viewer. In addition to genes a...ogenes, users can annotate ncRNAs (snRNA, snoRNA, tRNA, rRNA), miRNAs, repeat regions, and transposable elements; e...1815 days ago
gEVAL: Genome Evaluation Browser
The gEVAL Browser allows the evaluation of genome assemblies through its too...er is the ability to navigate an up to date assembly and identify problematic regions and assist in strategizing po...1797 days ago
Miropeats: discovers regions of sequence similarity amongst any set of DNA sequences
Miropeats discovers regions of sequence similarity amongst any set of DNA sequences and then presents...in its traditional role sorting out a big mess of overlapping or similar regions....1728 days ago
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
Long-read sequencing technologies have become increasingly popular in genome projects due to their strengths in resolving complex genomic regions. As a leading model organism...1728 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
chromoMap provides interactive, configurable and elega...aphics visualization of chromosomes or chromosomal regions allowing users to map chromos...justing chromosome range or visualizing chromosome regions such as genes adding labels...1716 days ago
mosdepth: fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
mosdepth can output: per-base depth about 2x as fast samto...NV calling.the mean per-region given a BED file of regions.a distribution of proportion...of mean depths per chromosome and within specified regions per chromosome.1645 days ago
MGSE: Mapping-based Genome Size Estimation
MGSE can harness the power of files generated in genome seq...SE to calculate the coverage in provided reference regions and to calculate the total nu...nome size estimation. Providing accurate reference regions is crucial for this genome si...1584 days ago
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