Tags: Bioinformatics, Spines, Satsuma, Synteny, Papaya, SLAP, Tools
3002 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does no...Tags: Bioinformatics, NGS, Sequence, Alignment, Synteny, Comparative genomics, Genomics
2908 days ago
Tags: Bioinformatics, Strudel, View, Synteny, Genome, Viewer, Comaparative genomics
2768 days ago
Tags: Bioinformatics, Musrsaki, Plot, Synteny, Genome, Viewer, Comparative genomics
2768 days ago
Comparative genomics educational material and papers bookmarks
Alignment of the porcine genome against seven other mammalian genomes (Supplementary Information) identified homologous synteny blocks (HSBs). Using porcine HSBs and stringent filtering criteria, 192 pig-specific evolutionary breakpoint regions (EBRs) were located. The number of porcine EBRs is c...Tags: Bioinformatics, Comparative genomics, Genomics, Chromosome, Synteny, Evolution
2727 days ago
Tags: Bioinformatics, Analysis, Alignment, Synteny, Spines
2709 days ago
Tags: Bioinformatics, Analysis, Synteny, Database, Genomicus
2691 days ago
Tags: Bioinformatics, Analysis, NGS, Genome, Synteny, Homology, MCscan
2685 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often based on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational to...Tags: Bioinformatics, Plot, Synteny, Genome, Viewer, Comparative genomics
2658 days ago
Tags: Tool, Conversion, Recover, Synteny, Blocks, Multiple, Alignment, MAF, Format, maf2synteny
2538 days ago