Results for "System biology approach"
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Ensembl comparative genomics resources
The Ensembl comparative genomics resources are one such reference set that facilitates comp...of the annotation across species and the focus on vertebrates makes Ensembl an ideal system t...3001 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare...contrast the data becomes increasingly important. Using the power of the human visual system t...2943 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the co...2926 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualis...a QC step Blaxter Lab, Institute of Evolutionary Biology, University of Edinburgh Goa...nbsp;Frontiers in Bioinformatics and Computational Biology...
2895 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Relea...biological themes among gene clusters.” OMICS: A Journal of Integrative Biology,...
2892 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as...hat takes your commands from the keyboard and gives them to the operating system. Most Linux systems...2886 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of bio...n background for specific modules. Major focus of CSBB is to allow users from biology...
2879 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M.... "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology...
2822 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algori...undreds of genes. We present novel methods for the systema...d to discover novel motifs. We used an enumeration approach to select strongly conserved...2746 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_ass...script describing the new features and algorithms is available at Genome Biology....2807 days ago
