Results for "Systems Biology and Computational Biology; Molecular Biology"
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SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keep...s, i.e. following the conserved order and orie...Satsuma has parallelization built-in and is de...ite. An incomplete list of questions and ans...2928 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2921 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAG...Lab, Institute of Evolutionary Biology, University of Edinburgh...ta for contaminants, symbionts and parasites using taxon-annotated GC-cove...sp;Frontiers in Bioinformatics and Computational Biology special issue : Quality asses...
2897 days ago
- statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor ver...implements methods to analyze and visualize functional profiles...ontributions from Li-Gen Wang and Giovanni...install this package, start R and enter:## try http:// if https://...
2894 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently...ory (cd) to the linuxTutorial folder, and do all th...ercises as it is a language in itself and is u...that is a program that takes your commands from...m to the operating system. Most Linux systems...2888 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acqui...ed in Perl, while it also leverages the use of R and python in...ules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get...
2881 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps Research Institute. It is especially effective for protein-ligand doc...1436 days ago
- RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler a...de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computati...r identifying repeat element boundaries and fam...
2831 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira...ic Framework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186...
2824 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome co...gs for more than 90% of genes and intergenic regions across the...frame of functional proteins and developed a test for gene identificatio...f previously annotated genes) and refi...rom the current literature on computati...2748 days ago
