Results for "Systems Biology and Computational Biology; Molecular Biology"
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GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, al...ing from insertions, deletions or from rearrangement events. Computati...ver, providing a visualization that still allows for a quick and com...2678 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at...inding the single best alignment per query and is d...ss time than BWA-SW across all SV classes, and espec...AHA is currently supported on 64-bit Linux systems...
2676 days ago
- EasyBuild is a software build and installation framework that allows you to manage (scientific) software on High Performance Computing (HPC) systems in an efficient way.A full list of supported software packages is available here.
2668 days ago
- Harvest is a suite of core-genome alignment and visualization tools for quickly analyzing thousands of intraspecific microbial geno...calls, recombination detection, and phylogene...s HarvestTools - Archiving and post...ecific microbial genomes. Genome Biology, 15 (11), 1-15 [PDF]...
2665 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which u...Decoding Methods for Optimization and Control of Multiple Alignments." FSA b...ale problems such as aligning thousands of...inference algorithm to reduce the computati...cost of multiple alignment. This randomiz...2659 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool t...o dynamically add data to the figure, and providing...data points using mouse hover display and zoom...nable it to be used on most operating systems (...more complex chromosomal interactions and fus...
2648 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswi...now supports large scale RNA- and small-RNA-Seq and Unique Molecular Identifiers (UMIs) for...using a strong foundation of computational, scientific, and medical expertise, Strand is...2400 days ago
- A computational pipeline for identifying single-base substitutions between two closely related...ome. DIAL works even when the depth of coverage is insufficient for de novo assembly, and it...
2636 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typic...be fully annotated in less than 10 minutes on a quad-core computer, and scales well to 32 core SMP systems. It produces GFF3, GBK and SQN...2631 days ago
- High throughput sequencing (HTS) technologies are being applied t...de range of important topics in biology. However, the analyses of non-model...ddresses the specific strengths and weak...ternative HTS technologies, the computational resources needed for HTS, and how to analyze non-model species...
2601 days ago
