Results for "TE"
Top-level pages
Bioinformatics infrastructure speed up Indian agriculture
...can bring about, the government is focusing on increased bioinformatics intervention in agri-sciences. Currently under process, the national grid on bioinformatics is expected make much better sense out o...3711 days ago
List of bioinformatics open source projects/software.
...scientists. AMPHORA ("AutoMated Phylogenomic infeRence Appli...s/biotutorial/ Educational interactive tutorials and 3D anima...aggle.net/ A framework for interoperability between systems b...s’ in choosing appropriate statistical techniques and re...3758 days ago
List of In-silico Binding Site Prediction Tools
...e list of In-silico Binding Site Prediction in Proteins tools CASTp : http://sts....tment of Computational and System Biology at the University of...nt (MCC) scores and Binding-site Distance Test (BDT) scores th...is a very fast open source protein pocket (cavity) detection a...3745 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...of SIMCOAL 1.0, a program written by Laurent Excoffier, John Novembre, and Stefan Schneider. http://www.stan...web.up.ac.za/default.asp?ipkcategoryid=3283CoaSim CoaSim is a...lHAPSIMU A program that simulates heterogeneous populations wi...ive phenotype simulation in extended pedigrees http://sourcefo...3738 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin...ch will help you to manage your systems effectively and handle huge...relies heavily on Linux-based computers and software. Although most...eries is to help you understand system admin as well as basic tools...3707 days ago
Perl one-liner for bioinformatician !!!
..., converting and substituting text, deleting and printing cert...r. Anything that took you minutes to solve, will now take you...er only lines that match a patternperl -ne 'print ++$a." $_" i...verts ascii values into character strings.perl -le '@odd = gre...3629 days ago
Next generation sequencing in R or bioconductor environment
...asses are more flexible and extensible to store additional inf...equences that are overrepresented in some part of the list. Th...ieved automatically via the Internet, so it's recommended that...yroidSE explains how to generate exon read counts in R DEGseq...3626 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Wo...next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP-seq, browser and o...d-and-extend alignment, SNP detection, repeat detection, and v...ch. MIRA2 - MIRA (Mimicking Intelligent Read Assembly) is able...3520 days ago
- ...y important role in therapeutic related research and also known to p...re some important DBs and tools related with miRNA: miRNA Sequencin.../ RNAhybrid : http://bibiserv.techfak.uni-bielefeld.de/rnahybr...grn.noble.org/psRNATarget/ miRNA Interaction DB : http://starb...
3497 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-ann...ttp://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wiki...3550 days ago
