Results for "TE"
Top-level pages
Quick next generation sequencing (NGS) terms definition
...bsp;the Illumina WGS protocol generates paired-end reads from both e...of the paired ends span within an interval [δmin,δmax]....rically for each WGS data set separately.concordant reads: a re...ad pair is considered discordant. Note that, by definition, the disc...2523 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl framewo...oysttyer/oysttyer - An interactive console text-based com...l. abw/Template2 - Perl Template Toolkit v2 stf-storage...ich use Perl. Initially generated from postings to jobs.perl.o...ta - Gist clone for private use written in Perl gonzoua/...2491 days ago
- It is often necessary to import sample textbook data into R before you...om first sheet Alternatively, we can use the func...turns a list of components instead. > library(forei...d contain the column names instead of the actual data. Here is...
2490 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...t," where "hair" is the character, and "present" and "absent"...derived -- Describes a character state that is present in one...any series of organisms connected by reproduction by parent of...ith the diversity of life. Systematics is usually divided into...2463 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...into disjoint transcript clusters; uses sig-mers, a spec...//github.com/bioinfo-ut/GenomeTester4/ Phy-Mer Reference-ind...ng a dimensionality reduction technique MinHash Software (Jav...Hash dimensionality-reduction technique) Software (C++) http...2372 days ago
- ...lasmidSPAdes pipeline for plasmid detection --iontorrent...is required for IonTorrent data --test runs SPAde...<filename> file with interlaced reads for mate-pair lib...file with TSLR-contigs --trusted-contigs <filename&g...
2352 days ago
Single Cell RNAseq data analysis tutorial !!
...ugh (replaced microarrays) in the late 00’s and has been widel...s Insufficient for studying heterogeneous systems, e.g. e...l RNAseq data analysis Tutorial A step-by-step workflow for low-lev...RNA-Seq data http://biorxiv.org/content/early/2016/09/02/036558 Ci...2352 days ago
- ...e used in all cases. We review all of the major steps in RNA-seq data analysis, i..., visualization, differential gene expression, alternative splicing, functional a...l exploratory analysis and DE RNAseq analysis notes from Tommy Tang Analysis of...
2352 days ago
Edit distance application in bioinformatics !
...on of two adjacent characters; the longest common s...transposition. use Text::Levenshtein qw(distance);...my $css_ary_ref = CSS_Sorted( \@SEQ1, \@SEQ2 ); # ref to...partial or fuzzy matching of text based on edit distance.&nbs...2342 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST...h most programs that run on UNIX, the text output is in some specific...there will be one or more parsers written for that format – thes...o;ll discuss ‘git’ more later; for now, just think of it a...2338 days ago
