Results for "TE"
Top-level pages
Awk for Bioinformatician and computational biologist
...ine, it matches with given pattern in the given order, if matc...hat matches with the given patterns which is the default actio...delimited by whitespace character by default and stores it in...: $ awk 'NR==3{$0=$1}1' data/test.tsvcontig1 ACTGTCTGTCACTGTG...2301 days ago
Computational resources for TE discovery and TE detection
...ation and alignment has generated increasing interest in devel...of resource and location for TE discovery and TE detection:...evolution/ltr.pl FINDMITE http://jaketu.biochem.vt.edu/...mummer.sourceforge.net/ REPuter http://www.genomes.de/ Ret...2296 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...sion analysis, Splicing events and gene fusion detection. Strand NGS also support...GS features such as PCA, sample correlation, clustering, Venn diagrams, CVA, UMI...te pipelines for time consuming jobs which automates analysis and leaves more tim...2286 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...relatively common in prokaryotes and single-celled eukar...rarer in multicellular eukaryotes. In order for a eukaryotic s...rong negative selection, despite potential for genetic incompa...oNet / 3.6.1 HGT detection / download binary...872 days ago
Python learning resources for bioinformatics and computational biologist !
...ginner's Python Tutorial A Byte of Python (3.x) (HTML, P...pplications in Python the antitextbook (3.x) (HTML, PDF,...tist: Learning with Python, Interactive Edition (3.2)...Week (2.x) Python Notes for Professionals - Com...2277 days ago
- .......A or G or T H.................A or C or T V.................A or C or G N.................any base . or -............gap Protein: Amino Acid Code: Three letter Code: Amino Acid: ---------...
2267 days ago
Some useful Bioinformatics links
...s://nanoporetech.com/taxonomy/term/131 De novo long-read assem...e https://github.com/nanoporetech/ont-assembly-polish Generad...Disco: Multi-threaded Distributed Memory Overlap-Layout-Consen...//bernatgel.github.io/karyoploter_tutorial//Tutorial/CreateIde...2263 days ago
- ...iles based on their list in a text file: cat file_list.txt |...ead line; do cp "$line" complete_dataset/"$line"; done To spl...keep only one copy of duplicated lines: awk '!seen[$0]++' T...1)}' | sort | uniq -c To deinterleave interleaved fastq file:...
2239 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C&nb...order to install this perl extension you have to install io-l...qIOALF.Tpo" -c -o seqIOALF.o `test -f '../alf/seqIOALF.c' || e...file_url':open_trace_file.c:(.text+0xaf4): warning: the use of...2240 days ago
Tools to Predict the Impact of Missense Variants !
...olyPhen‐2, SIFT, FatHMM, MutationTaster‐2, MutationAssessor, Combine...rectly predict the pathogenic character of new variants. Study of...ity confounded tools are most accurate among all tools, and may even...er to these deficits as “rejected substitutions.” Reject...2225 days ago
