JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...irectly over HTTP. Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX and Windows using the Electron platform Highly extensible plugin...2130 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
Choosing whether to use second or third generation sequencing platforms can lead to trade-offs between acc...g read as a profile Hidden Markov Model with respect to the underlying platformtextquoterights error profi...2078 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...ram for rapid identification of local sequence conservation, and the multiTF program for detecting evoluti...d conserved transcription factor binding sites identified with Mulan/multiTF can be integrated and overlai...2074 days ago
Qualimap2: Evaluating next generation sequencing alignment data
Qualimap 2 is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the qual...2057 days ago
1990 days ago
SIMBA: a Genome Assembly Project Management System
...of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacterial genomes sequenced with NextGeneration Sequencing (NGS) platforms quickly, easily and effec...1977 days ago
HumCFS: a database of fragile sites in human chromosomes
...t CFS are unequally distributed in literature, which impose a problem in studying these region. In order to address these issues, we develop this platform HumCFS, which provides com...1834 days ago
1967 days ago
Genome sequence-based (sub-)species delineation.
The GGDC web service reports digital DDH for a universal and accurate delineation of prokaryotic (sub-)species without inheriting the pitfalls of classic DDH, and also calculates di...1964 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...ening, bioactivity prediction and data visualization. Molinspiration tools are written in Java, therefore can be used practically on any computer platform.1926 days ago