2881 days ago
2854 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1238 days ago
2630 days ago
2595 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
...genomes, the program allows the user to design a metagenome by specifying the number of genomes present at different levels of the NCBI taxonomy, and then to collect reads fr...2356 days ago
2349 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...(iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely ava...2279 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application availab...2258 days ago
1954 days ago