proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://d...2312 days ago
REVIGO: Reduced Visualize gene ontology
REViGO can take long lists of Gene Ontology terms and summarize them by removing redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interactive graphs, or ta...2105 days ago
Ensembl Variation - Calculated variant consequences
...ipts. We then use a rule-based approach to predict the effects that each allele of the variant may have on each transcript. The set of consequence terms, defined by the Sequence...2064 days ago
1941 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologo...1925 days ago
IQ-TREE: Efficient software for phylogenomic inference
...t and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares favorably to RAxML and PhyML in terms of likelihoods with similar c...1903 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...istory’ display. Adding and updating PubMed IDs will prompt users with a publication title to confirm their submission. Gene Ontology (GO) terms are supported and GO ID auto-...1800 days ago
Musket - a multistage k-mer spectrum based corrector
...ploys the k-mer spectrum approach and introduces three correction techniques in a multistage workflow. Our performance evaluation results, in terms of correction quality and de...1551 days ago
1483 days ago
HASLR: a hybrid assembler which uses both second and third generation sequencing reads
...o the one with the lowest number of misassemblies on all the samples compared to other tested assemblers. Furthermore, the generated assemblies in terms of contiguity and accuracy ar...1462 days ago