3810 days ago
List of gene ontology software and tools
...tions about GO structures, GO annotations, and what can and can not be extrapolated from GO resources. Here are ten quick tips for using the Gene Ontology. Read "Ten Quick Tips for Using the Gene Ontology"...3702 days ago
2843 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
...sis of Affymetrix Gene Expression Arrays using R/Bioconductor General Tips for Data Analysis Excel workarounds, adding gene annotation, X-Y plots tips, etc....2924 days ago
1208 days ago
3935 days ago
Some useful Bioinformatics links
...r 3 examples http://mummer.sourceforge.net/examples/ MAFFT ver.7 - a multiple sequence alignment program https://mafft.cbrc.jp/alignment/software/tips.html Omega | Overlap-graph de...2234 days ago
Ten recommendations for creating usable bioinformatics command line software
Bioinformatics software varies greatly in quality. In terms of usability, the command line interface is the first experience a user will have of a tool. Unfortunately, this is often also the last time a tool will be used. Here I present ten recommendations for command line software author’s...Tags: Bioinformatics, Computational Biology, Rules, Server, Software, Tips, Suggestions
3611 days ago
Ten quick tips for deep learning in biology
By taking a comprehensive and careful approach to deep learning based on critical thinking about research questions, planning to maintain rigor, and discerning how work might have far-reaching consequences with ethical dimensions, the life science community can advance reproducible, interpretable...Tags: Ten, quick, tips, deep, learning, biology
764 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...994 asymmetric arcs[M::main] ===> Step 4.2: initial tip cutting and bubble popping <===[M::asg_cut_tip] cut 2053 tips[M::asg_pop_bubble] popped 254 bubbles and trimmed 20 tips[M::main] ===> Step 4.3: cu...2274 days ago