vt: a variant tool set that discovers short variants from Next Generation Sequencing data.
vt is a variant tool set that discovers short variants from Next Generation Sequencing data. https://genome.sph.umich.edu/wiki/Vt https://github.com/atks/vt1570 days ago
1554 days ago
BlobToolKit: A toolkit for genome assembly QC
Filtering raw genomic datasets is essential to avoid chimeric assemblies and to increase the validity of sequence-based biological inference. BlobToolKit extends the...1546 days ago
Best Practices for Variant Calling with the GATK
...ations below were filmed during the March 2015 GATK Workshop, part of the BroadE...sion of Broad’s Genome Analysis Toolkit (GATK) was version 3.3....PDF Video 03/19/15 Introduction to the GATK Geraldine Van der Auwera PD...1545 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...859 days ago