Comment on "Software packages for next gen sequence analysis"
MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data MaGuS (Map-GUided Scaffolding) is a scaffolder and a ref...2908 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Check out the new addition of synteny detection tool SimpleSynteny http://www.dveltri.com/simplesynteny/2923 days ago
Comment on "Computer simulation of genetic mechanism !!"
Thanks for the list. I came across GPOPSIM: a simulation tool for whole-genome genetic data ( http://b...1186/s12863-015-0173-4 ), which seems the best for be a useful tool for the methodological and th...2928 days ago
2931 days ago
Comment on "Computer simulation of genetic mechanism !!"
Thanks for such a useful list of tool for simulation studies. I guess you forgot to add RSVSim: an R/Bioconductor package for the simulation of structural variations ( https://www.bioconductor.org/packages/release/bioc/html/RSVSim.html ) in the list.2974 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such a useful list of synteny identification tools. If anyone interested to analyze synteny at the protein level, they can try this tool https://github.com/thiesgehrmann/proteny2984 days ago
3009 days ago
Comment on "List of popular bioinformatics software/tools"
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the B...3036 days ago
3036 days ago
Comment on "List of gene ontology software and tools"
Thanks for the useful collection of GO tools. I found FuncAssociate also very useful. It is a web-based tool to help researchers use Gene...3181 days ago