Results for "Tools"
Bio-Scripts
➜ Tools git:(master) ✗ wget https://github.com/samtools/htslib/releases/download/1.9/...saved [1178859/1178859] ➜ Tools git:(master) ✗ tar -vxjf htsl....in htslib-1.9/configure ➜ Tools git:(master) ✗ cd htslib-1.9...-I. -fpic -c -o cram/cram_samtools.pico cram/cram_samtools.c gc...2013 days ago
Installing Platypus on Ubuntu !
...l -O2 -I. -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -...o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/file...ter release! File: /home/urbe/Tools/Platypus/src/cython/fastafile...ter release! File: /home/urbe/Tools/Platypus/src/cython/cwindow.p...2013 days ago
Setting up falconUnzip conda environments for genome assembly !
...83 KB conda-forge setuptools-40.6.2 | p...bioconda bcftools: 1.9-h4da6232_...1000 conda-forge samtools: 1.9-h8ee4bcc_...# # PacBio(R) tools distributed via Bioconda are:...1983 days ago
- ...st-2.8.1+-x64-linux.tar.gz # decompress tar -zxvf ncbi-blast-2.8.1+-x64-linux.tar.gz # add BLAST location to system PATH export PATH=$HOME/tools/BLAST/ncbi-blast-2.8.1+/bin:$...
1755 days ago
Perl script to run in parellel !
...$seq) = @_; open FILE, ">$fn" or die $!; system ("augustus --species=caenorhabditis --outfile=$fn $seq --AUGUSTUS_CONFIG_PATH=/home/urbe/Tools/Alienomics_v1.1/augustus.2.5....1680 days ago
Bash script to download SRA file !
...astq-dump --split-files SRR1770413 #SRA stores data in a particular compressed format (SRA!) that isn't directly compatible with any downstream tools, so it's necessary to put thi...1553 days ago
Commands to install conda in Ubuntu !
...serves the right to change w hich third party tools are provided in Anaconda Dist...1.1.2-py37he904b0f_5 ... installing: more-itertools-6.0.0-py37_0 ... installing:...: qtawesome-0.5.7-py37_1 ... installing: setuptools-40.8.0-py37_0 ... installing...1505 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 --...
1436 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICAR...1331 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen s...
1209 days ago
