Results for "Transcriptome analysis"
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOME...iving head first into more advanced analysis tools such as HOMER. Setti...anscript discovery and differential analysis with Cufflinks Differential...or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2928 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2926 days ago
- AccNET is a Perl application that presents a new way to study t...bipartite network compatible with common network analysis platforms. AccNET collects ph...functional information in a network improving the analysis capability. Networks offer a...
2764 days ago
- High-throughput genomics has revolutionized biological research, however, while the number of sequenced genomes grows...vides measures for quantitative assessment of genome assembly, gene set, and transcri...
2914 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in q...2904 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2904 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2901 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants...
2890 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise...hroughput sequencing data). It contains bash/perl/R scripts for running the analysis presented in the paper to cre...
2880 days ago
- The Genome Assembly Evaluation&nbs...ting (GAEMR) package is an assembly analysis framework composed a number o...ngle program to generate a complete analysis report, or executed individua...at to be entered into GAEMR’s analysis pipeline, hence enabling the...
2879 days ago
