Results for "Transcriptome analysis"
Top-level pages
...f applications, but no single analysis pipeline can be used in all c...e major steps in RNA-seq data analysis, including experimental desig...ernative splicing, functional analysis, gene fusion detection and eQ...ene and transcript expression analysis of RNA-seq experiments with T...2347 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subs...and provides detailed annotation and pathway analysis. Takes several hours per geno...want to do functional profiling and pathway analysis of your genome(s)… whi...2328 days ago
List of visualization tools for network biology
...om/articles/sections/networks-analysis. Following are the list of...icient integrated multi-level analysis of microarray, sequence, regu...Igraph Collection of network analysis tools with the emphasis on ef...Automatic reconstruction and analysis of biological networks and Pe...2285 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for show...inal results but also for improving analysis protocols, testing data quali...g result drafts. Its integration in analysis pipelines allows the optimiza...on tools, which could be useful for analysis and interpretation of re...2280 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving experience...2277 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on g...erated increasing interest in developing new methods for their computational analysis. Following are the list of...2270 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...S is a biologist friendly NGS analysis tool that allows biologists to ana...f the workflow which includes Transcriptome/ Genome alignment, Differential expression analysis, Splicing events and gene fus...orts large scale RNA-Seq data analysis too. The tool also supports b...2261 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anyth...ibraries. Professionally, Python is great for backend web development, data analysis, artificial intelligence, and...2252 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads |...sing-bedtools-and-r/ Eval: A software package for analysis of genome annotations | BMC B...ur.be/SOGo/so/jnarayan/Mail/view Tetra-Nucleotide Analysis (TNA) | BIOiPLUG Help center...2238 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which...tabase (for example, dbSNP) Package for NGS data analysis, which includes a single indi...broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit Multi-sample Aligned...2093 days ago
