Public Databases for Bioinformatics !
...goldenPath/hg38/bigZips/hg38.fa.gz. For use case 2 we used the set of narrowPeak files summarized in https://github.com/wkopp/janggu_usecases/tree/master/extra/urls.txt (a...1134 days ago
3383 days ago
2615 days ago
Alignment of closely related whole genomes/scaffolds
...and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volu...3014 days ago
Ensembl comparative genomics resources
...tained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both prot...izations are also available including synteny displays, collapsible gene tree plots, a gene family locator...2984 days ago
2836 days ago
iTOL: interactive Tree Of Life
Interactive Tree Of Life is an online too...manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel c...to several thousand leaves). Trees can be exported to several g...n upload and display personal trees and data, using the 'Data up...2646 days ago
TMAP - torrent mapping alignment program General Notes
...de: git clone git://github.com/iontorrent/TMAP.git cd TMAP git submodule init git submodule update https://github.com/iontorrent/TS/tree/master/Analysis/TMAP2585 days ago
WGS Celera Assembler version 8.3rc2
...Biosciences/pbdagcon PBDAGCON], [https://github.com/PacificBiosciences/BLASR BLASR], and parts of the [https://github.com/PacificBiosciences/FALCON/tree/v0.1.3 Falcon assembler].Full...2577 days ago
2577 days ago