2369 days ago
Bandage: interactive visualization of de novo genome assemblies
.... By displaying connections between contigs, Bandage presents new possibilities for analyzing de novo assemblies that are not possible through investigation of contigs alo...2364 days ago
2360 days ago
Mugsy: multiple whole genome alignment tool
Mugsy is a multiple whole genome aligner. Mugsy uses Nucmer for pairwise alignment, a custo...iple alignment strategy from Seqan::TCoffee. Mugsy accepts draft genomes in th...oes not require a reference genome. To cite Mugsy, use: Angiuoli SV and Salz...2360 days ago
TeachEnG: Teaching Engine for Genomics
...tree reconstruction algorithms, with accompanying video tutorials. Please contact us via email (knoweng@illinois.edu) if you have any questions or suggestions.2355 days ago
Building Web UIs With Mojolicious Perl
...production server and many other features one needs to build a web application. It's easy to install, has an applciation generator script and many plugins and extensions. Libraries...2342 days ago
Recovery of complete genomes from metagenomes
...d in: Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Mads Albertsen, Philip Hugenholtz, Adam Skarshewski...2341 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
Ultimate tool for resolving repeats in genome assemblies. Though the specific implementation of the idea...(RGM) as the separate code which can be run independently of SPAdes. Although RGM differs from the current...2340 days ago
Seal: SEquence ALignment evaluation suite
...based on input parameters of read length, coverage, sequencing error rate, and indel rate. Applying alignment tools to the genome and the reads through a standardized interface. P...2334 days ago
LRCstats: Long Read Correction Statistics
...he reads produced by third generation sequencing technology, as the name suggests, are longer in length th...read correction algorithms reduce the error rate of long reads either through self-correcting methods or u...2332 days ago