UCSC Genome Browser and Blat software !
...l licensing of the Genome Browser software, see http://genome.ucsc.edu/license/. The Blat and In-Silico PCR software may be commerciallylicensed through Kent Informatics (http://www...2999 days ago
2999 days ago
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2928 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
...ent algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming...2929 days ago
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2914 days ago
2914 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...e cite: Grabherr, M. G., Russell, P., Meyer, M., Mauceli, E., Alföldi, J., Di Palma, F., & Lindblad-Toh, K. (2010). Genome-wide synteny through highly sensitive sequence al...2914 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to ass...2906 days ago