Results for "Update"
Bio-Scripts
Bash online to update Linux OS
sudo bash -c 'for i in update {,full-,dist-}upgrade auto{remove,clean}; do apt-get $i -y; done'692 days ago
- (JitMetaENV) ➜ setu git:(master) ✗ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment: failed with initia...
1149 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1055 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repodata.json): done Solving environment...
1055 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1055 days ago
- ....archive.ubuntu.com/ubuntu bionic-updates/main amd64 autopoint all 0.1....archive.ubuntu.com/ubuntu bionic-updates/main amd64 libc-dev-bin amd6....archive.ubuntu.com/ubuntu bionic-updates/universe amd64 dh-translatio...blas3:amd64 (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/...
1055 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving enviro...1055 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1055 days ago
Bash script to check installed bioinformatics program !
...if [ $? -ne 0 ] then echo " $name not installed :: Try installing $name with conda first" #sudo apt-get update #sudo apt-get in...1047 days ago
- ...nv list #Activate an Environment for Use $ conda activate myenv #Update Conda Environments Using a YAML File $ conda activate earth-analytics-python $ conda env update -f environment.yml #Adding...
962 days ago
