Results for "VG"
Bio-Scripts
Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2174 days ago
- ...network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libwxbase3.0-...network5 libqt5printsupport5 libqt5svg5 libqt5widgets5 libwxbase3.0-...com/ubuntu bionic/main amd64 libqt5svg5 amd64 5.9.5-0ubuntu1 [128 kB...reviously unselected package libqt5svg5:amd64. Preparing to unpack...
1561 days ago
- ...let width = $(window).width() - 20, height = $(window).height() - 20 let svg = d3.select("body") .append("svg") .attr('id', 'chart...
1544 days ago
Pack a perl program with their dependencies on Ubuntu !
...n of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo...1531 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1462 days ago
- (JitMetaENV) ➜ ~ conda install -c bioconda quast Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer vers...
1235 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen...
1235 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...lding CXX object src/CMakeFiles/i-visualize.dir/SvgWriter.cpp.o [ 32%] Building...Two.cpp.o /home/urbe/Tools/i-adhore-3.0.01/src/SvgWriter.cpp: In member function...t/datasetI/arath_2_3_beta/AlignmentMultiplicon2.svg -- Installing: /home/urbe/an...1223 days ago
- ...eric-recommended texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo gir1.2-rsvg-2.0 The following NEW packag...
1074 days ago
Perl script to parse blast results and plot basic stats !
...-----------------------\n"; } # Calculate additional statistics my $avg_percent_identity = calculate_average(\@blast_entries, 'PERCENT_IDENTITY'); my $avg_alignment_length = calculate_...114 days ago
