Results for "Validation"
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VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g., ma...2780 days ago
LIBSVM -- A Library for Support Vector Machines
...fferent SVM formulations Efficient multi-class classification Cross validation for model selection Probabil...olver. Automatic model selection which can generate contour of cross validation accuracy. https://www.cs...2466 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
...Java software CHSMiner that detects CHSs based on shared gene content alone. It implements fast greedy search algorithm and rigorous statistical validation, and its friendly graphical i...2357 days ago
mojolicious: a next generation web framework for the Perl programming language.
...plications. Powerful out of the box with RESTful routes, plugins, commands, Perl-ish templates, content negotiation, session management, form validation, testing framework, static fi...2302 days ago
repeat-aware: Repeat aware scaffolding evaluation framework by Igor Mandric
...ion is correct Their relative order is correct The gap estimate is similar to the true distance on the reference The problem of scaffolding validation is also a challenging one. On...2234 days ago
- VCFtools contains a Perl API (Vcf.pm) and a number of Perl scripts that can be used to perform common tasks with VCF files such as file validation, file merging, intersecting, complemen...
2096 days ago
- ...genomes. The GTDB-Tk is open source and released under the GNU General Public License (Version 3). GTDB-Tk is under active development and validation. Please independently confirm...
2081 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...that have high probability to appear uniquely in the genome. Such seeds form the basis for BASE to build extension trees and then to use reverse validation to remove the branches based...2023 days ago
EGAD: Ultra-fast functional analysis of gene networks
...ectorized (neighbor_voting), allowing network characterization across even thousands of functional groups to be accomplished in minutes in cross-validation and an analytic determination...1967 days ago
Genome assembly forensics: finding the elusive mis-assembly
...sent the first collection of tools aimed at automated genome assembly validation. This work formalizes several...g mis-assemblies, and describes their implementation in our automated validation pipeline, called amosval...1923 days ago
