Illumina based assembly pipeline steps !
...t reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...mosdepth) Choice of multiple variant calling and consensus sequence genera...ult for metagenomics data) Variant annotation (SnpEff, SnpSift)...read, alignment, assembly and variant calling results (MultiQC)...871 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S....17; 33(7):1086–1089, TGC Compressor of collections of genomes given in Variant...857 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General information. Field terminator is "\t|\t" Row...associated with this name name_txt -- name itself unique name -- the unique variant...654 days ago
Common steps for reads mapping !
...me is an essential step in many types of genomic analysis, such as variant calling and gene expression analysis....de filtering reads based on quality, removing duplicate reads, and calling variants. Overall, mapping reads...417 days ago