2728 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously rising, allowing for comparative analyses of genomic variation. Such analyses are often base...ualization that still allows for a quick and comprehensive interpretation of all important genomic variati...2677 days ago
2648 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code...reater than 10,000 bp). PBHoney considers both intra-read discordance and sof...2637 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or...10 popular alignment, analysis tools and runs the script line by line....intersection among different callers, and downloading databases. SeqMule can be used for both Mendelian disease study and cancer genome study...2629 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instructions" in each ta...2362 days ago
PGAP-X: Extension on pan-genome analysis pipeline
...erface. Serials of algorithms and methodologies have been developed and integrated to analyze and visualize genomics structure variation, gene distribution with...ifferent conservative levels, and genetic variation from pan-genome sight....in PGAP-X were shown as Fig.1 and Fig...2307 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1...pulation epigenetic framework” and can perform: (1) epigenome-wi...otype (meplotype) association study; and (3) epigenome-wide association me...2250 days ago
2182 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
KAT is a suite of tools that analyse jellyfish hashes or sequence fil...nce file. blob: Given, reads and an assembly, calculates both...ting tools to visualise K-mer and compare distributions. The fo...t, as well as the copy number variation present within the asse...ief details of how to install and use...1995 days ago