Next Generation Sequencing (NGS) Tutorials
...org/content/19/R2/R227.full.pdf ============================================== NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&nb...3479 days ago
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GenomeRing: alignment visualization based on SuperGenome coordinates
...data or annotations. However, providing a visualization that still allows for a quick and comprehensive interpretation of all important genomic variations together with various supplem...2656 days ago
Pacbio Long Reads Compatible Software and Tools
...mmercial software. Know of any other open source software for PacBio data? Email us. Software categories: De novo assembly Structural Variations Detection Reference-based al...2600 days ago
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PASA: Gene Structure Annotation and Analysis
...ne structure annotation consistent with the most recently available experimental sequence data. PASA also identifies and classifies all splicing variations supported by the transcript a...2313 days ago
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EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0...2228 days ago
NGMLR: long-read mapper designed to align PacBio or Oxford Nanopore
...ncluding those spanning (complex) structural variations. Ngmlr uses an SV aware k-mer...r both the sequencing error and real genomic variations at the same time and makes it...eads to a wide range of different structural variations including nested SVs (e.g. in...2194 days ago