Results for "Velvet"
Blogs
Protocol for De novo Genome Assembly using Illumina Reads
...ant range of short-read assemblers are available. Everyone with strengths and disadvantages of their own. Some of the assemblers available include:VelvetSOAP-denovoMIRAALLPATHS Next...1216 days ago
Bookmarks
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
...lters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...1231 days ago
VAGUE:Velvet Assembler Graphical Front End
VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginn...2638 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...mes from fastq files in a short time and produces assemblies similar to Velvet or Ray in quality. LACHESIS...e coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. Moreov...2697 days ago
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...-throughput sequencing datasets with non-uniform coverage. Medvedev et al., Bioinformatics 27(13):i137-41, 2011. PubMedCentral De novo assembly Velvet: algorithms for de novo short...3791 days ago
Commercial and public next-gen-seq (NGS) software
...the SOAP suite. See above. VCAKE - De novo assembly of short reads with robust error correction. An improvement on early versions of SSAKE. Velvet - Velvet is a de novo genomic assemble...3530 days ago
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Wire posts
Comments
- Velvet advicer http://dna.med.monash.edu.au/~torsten/velvet_advisor/
2716 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
There are several other softwares Eland: http://illumina.ucr.edu/illumina_docs/Velvet:http://www.ebi.ac.uk/~zerbino/velvet/Maq (Mapping and Assembly with Quality): http://maq.sourceforge.net/maq-man.s...3634 days ago
